Commits · 9ff49cb276aca633f767b5731efce63bd1d78ca6 · BICF / Astrocyte / cellranger_count

Jul 23, 2019
- Final Version · 9ff49cb2
  Jeremy Mathews authored 5 years ago
  
  9ff49cb2
- New branch 29 · 45cbf237
  Jeremy Mathews authored 5 years ago
  
  45cbf237
- Merge branch '28-AddPytestCI' into 'develop' · 14599fcc
  Gervaise Henry authored 5 years ago
```
Resolve "Add pytest to CI"

Closes #28

See merge request !51
```
  14599fcc
- Merge branch '28-AddPytestCI' of... · 9eefea9d
  Jeremy Mathews authored 5 years ago
```
Merge branch '28-AddPytestCI' of git.biohpc.swmed.edu:BICF/Astrocyte/cellranger_count into 28-AddPytestCI
```
  9eefea9d
- update runtime settings · 8db1aed8
  Jeremy Mathews authored 5 years ago
  
  8db1aed8
- Update .gitlab-ci.yml · 27285ae6
  Gervaise Henry authored 5 years ago
  
  27285ae6
- final versions · e4ef9f0e
  Jeremy Mathews authored 5 years ago
  
  e4ef9f0e
- change runtimes · c5d8c6b2
  Jeremy Mathews authored 5 years ago
  
  c5d8c6b2
- new test · 2436e60f
  Jeremy Mathews authored 5 years ago
  
  2436e60f
- add new directories · e483e11a
  Jeremy Mathews authored 5 years ago
  
  e483e11a
- add detailed 3 · c1ab37d9
  Jeremy Mathews authored 5 years ago
  
  c1ab37d9
- Test simple 3 test with cellranger 3.0.2 · 4daaf239
  Gervaise Henry authored 5 years ago
  
  4daaf239
- Fix mkdir for 1k testdata · d0239152
  Gervaise Henry authored 5 years ago
  
  d0239152
- Run simple3 test (hv2s1) with 1k reads, and set simple1 test (h3s1) to auto chemistry · d72024dc
  Gervaise Henry authored 5 years ago
  
  d72024dc
- Revert "Test count211 for right cellranger module load" · b3b37b7e
  Gervaise Henry authored 5 years ago
```
This reverts commit 798c71d5
```
  b3b37b7e
- Test count211 for right cellranger module load · 798c71d5
  Gervaise Henry authored 5 years ago
  
  798c71d5
- revert to no astrocyte · 98101e80
  Jeremy Mathews authored 5 years ago
  
  98101e80
- astrocyte true in simple3 · 8c76242b
  Jeremy Mathews authored 5 years ago
  
  8c76242b
- make valid yml file · dc2bdad6
  Jeremy Mathews authored 5 years ago
  
  dc2bdad6
- add simple and detailed tests · d2b80f76
  Jeremy Mathews authored 5 years ago
  
  d2b80f76
Jul 22, 2019
- Restructure pytests · c0e59b31
  Jeremy Mathews authored 5 years ago
  
  c0e59b31
- Add CI updates · 62e0726d
  Jeremy Mathews authored 5 years ago
  
  62e0726d
Jul 10, 2019
- Update README.md · e4c36754
  Gervaise Henry authored 5 years ago
  
  e4c36754
- Update README.md · 603c8398
  Gervaise Henry authored 5 years ago
  
  603c8398
- Update CHANGELOG.md · e8ee7609
  Gervaise Henry authored 5 years ago
  
  e8ee7609
- Merge branch '27-CheckStyle' into 'develop' · 026b2a52
  Gervaise Henry authored 5 years ago
```
fixed style

Closes #27

See merge request !48
```
  026b2a52
- fixed style · 1fe100af
  Holly Ruess authored 5 years ago
  
  1fe100af
Jun 28, 2019
- Update CHANGELOG.md · 302083f1
  Gervaise Henry authored 5 years ago
  
  302083f1
- Merge branch '5-MultiQC' into 'develop' · ab0033d0
  Gervaise Henry authored 5 years ago
```
Resolve "Add MultiQC"

Closes #5

See merge request !47
```
  ab0033d0
- Slight formatting to match cellranger_mkfastq · fb55f7c1
  Gervaise Henry authored 5 years ago
  
  fb55f7c1
- Only output multiqc html and put in dir · 275a0a70
  Gervaise Henry authored 5 years ago
  
  275a0a70
- Format multiqc · 34036959
  Gervaise Henry authored 5 years ago
  
  34036959
- Change multiqc order and fic config param · 24271608
  Gervaise Henry authored 5 years ago
  
  24271608
- Repace mix for sample matrix summary · 274c185c
  Gervaise Henry authored 5 years ago
  
  274c185c
- Make seetings match mkfastq · 2d5e4560
  Gervaise Henry authored 5 years ago
  
  2d5e4560
Jun 27, 2019
- Add MultiQC to output. Add version and reference material. fix README · 8391da95
  Jeremy Mathews authored 5 years ago
  
  8391da95
May 24, 2019
- Update CHANGELOG.md · 87ca7c11
  Gervaise Henry authored 5 years ago
  
  87ca7c11
- Update astrocyte_pkg.yml · 3e4876a7
  Gervaise Henry authored 5 years ago
  
  3e4876a7
- Merge branch '26-ModuleLoad' into 'develop' · 92fdaee4
  Gervaise Henry authored 5 years ago
```
Resolve "Move module load into nextflow process"

Closes #26

See merge request !43
```
  92fdaee4
- Update CHANGELOG.md · 40a6540c
  Gervaise Henry authored 5 years ago
  
  40a6540c