Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
C
cellranger_count
Manage
Activity
Members
Labels
Plan
Issues
11
Issue boards
Milestones
Iterations
Wiki
Requirements
Code
Merge requests
0
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Locked files
Build
Pipelines
Jobs
Pipeline schedules
Test cases
Artifacts
Deploy
Releases
Container Registry
Operate
Environments
Monitor
Incidents
Service Desk
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Code review analytics
Issue analytics
Insights
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
BICF
Astrocyte
cellranger_count
Commits
d72024dc
Commit
d72024dc
authored
5 years ago
by
Gervaise Henry
Browse files
Options
Downloads
Patches
Plain Diff
Run simple3 test (hv2s1) with 1k reads, and set simple1 test (h3s1) to auto chemistry
parent
b3b37b7e
Branches
Branches containing commit
Tags
Tags containing commit
4 merge requests
!53
Develop
,
!51
Resolve "Add pytest to CI"
,
!50
Resolve "Add pytest to CI"
,
!49
Resolve "Add pytest to CI"
Pipeline
#4478
failed with stages
in 3 seconds
Changes
1
Pipelines
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
.gitlab-ci.yml
+3
-3
3 additions, 3 deletions
.gitlab-ci.yml
with
3 additions
and
3 deletions
.gitlab-ci.yml
+
3
−
3
View file @
d72024dc
...
...
@@ -10,7 +10,7 @@ before_script:
-
mkdir test_data/mu.v3s2r10k
-
ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/hu.v3s1r500/* test_data/hu.v3s1r500/
-
ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/mu.v3s1r500/* test_data/mu.v3s1r500/
-
ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/hu.v2s1r
500
/* test_data/hu.v2s1r
500
/
-
ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/hu.v2s1r
1k
/* test_data/hu.v2s1r
1k
/
-
ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/hu.v3s2r10k/* test_data/hu.v3s2r10k/
-
ln -sfn /project/shared/bicf_workflow_ref/workflow_testdata/cellranger/cellranger_count/mu.v3s2r10k/* test_data/mu.v3s2r10k/
...
...
@@ -37,7 +37,7 @@ simple_1:
except
:
-
master
script
:
-
nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion '
three
' --version '3.0.2'
-
nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion '
auto
' --version '3.0.2'
-
pytest -m count302
artifacts
:
name
:
"
$CI_JOB_NAME"
...
...
@@ -77,7 +77,7 @@ simple_3:
except
:
-
master
script
:
-
nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s1r
500
/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s1r
500
/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1'
-
nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s1r
1k
/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s1r
1k
/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1'
-
pytest -m count211
artifacts
:
name
:
"
$CI_JOB_NAME"
...
...
This diff is collapsed.
Click to expand it.
Preview
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment