GitLab

A host registry for various images used in Astrocyte

Source codes to perform simulations of microtubule growth. McCormick and Cleary et al. 2023 (in preparation), "Interface-acting nucleotide controls polymerization dynamics at microtubule plus- and minus-ends".

An example workflow package for the BioHPC Astrocyte workflow engine.

Journal Club for foundational machine learning topics

Transcript Analyzer is a module that aids in looking at and identifying target phrases in transcripts. There are two main files ProbTimeSeries.py and TranscriptAnalyzer.py the latter of which uses Streamlit to create an app

A repository for code to replicate the analysis of single cell data from female human urethra.

This is a set of python and R routines for converting imaging and mask information to radiomic features and perform simple classification task.

Files from the Advanced Concepts of Deep Learning Nanocourse

This is a test repo

misc code specific for placenta study

A Flywheel gear to import MEG metadata from files

A vagrant box containing the setup necessary for building singularity images

additional steps are necessary to build HON within UTSW due to proxy and firewalls

An R program to visualize, normalize, and analyze -omics data such as those from microarray, metabolomics and proteomics experiments. Data are supplied as a list or table along with parameter settings, all in an Excel file.

Simple Gears to help you start your own development at UT Southwestern

code for interchangeability by Nancy Obuchowski