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This repository contains scripts for ChIP-seq and RNA-seq analysis used in ARF paper

Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).

Autoregressive networks for protein

An Astrocyte workflow to run cellranger count on droplet-based single cell RNA data generated by 10x Genomics.

An Astrocyte workflow for interactive visualization and exploration of single cell data using CZ CELLxGENE.

A general purpose Astrocyte workflow to run quality control on single cell RNA sequencing data.

An R program to visualize, normalize, and analyze -omics data such as those from microarray, metabolomics and proteomics experiments. Data are supplied as a list or table along with parameter settings, all in an Excel file.

misc code specific for placenta study

A Flywheel gear to import MEG metadata from files