Explore projects

An R program to visualize, normalize, and analyze -omics data such as those from microarray, metabolomics and proteomics experiments. Data are supplied as a list or table along with parameter settings, all in an Excel file.

A host registry for various images used in Astrocyte

Journal Club for foundational machine learning topics

An RNA-seq data analysis workflow.

A single-cell RNA-seq analysis workflow for data stored on the BioHPC using CellRanger and Seurat.

An introduction to singularity

Three variants of regression models based on deep neural networks, random forest, and gradient boosting to predict chromatin interaction strength.

An Astrocyte workflow to clean single cell or single nucleus RNA data of technical artifacts using the tool CellBender.

This is the conversion of the BICF RNASeq pipeline into the nextflow framework.

An example workflow package for the BioHPC Astrocyte workflow engine.

An example workflow package for the BioHPC Astrocyte workflow engine.

This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.