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An R program to visualize, normalize, and analyze -omics data such as those from microarray, metabolomics and proteomics experiments. Data are supplied as a list or table along with parameter settings, all in an Excel file.

A host registry for various images used in Astrocyte

An introduction to singularity

Journal Club for foundational machine learning topics

An RNA-seq data analysis workflow.

A single-cell RNA-seq analysis workflow for data stored on the BioHPC using CellRanger and Seurat.

R code for subsample correlation analysis as used in Thody et al. 2022.

3 month training notes/walkthrough of excersises

Program that overlays MEG dipoles onto MRI images and provides region highlighting to show where the dipoles are located.

The runner for cutandrun

A Flywheel gear to import MEG metadata from files

Notebooks and scripts provided here can be used for analyzing data files generated by Tecan and Biotek plate readers.