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cellranger_count
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4daaf239
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4daaf239
authored
5 years ago
by
Gervaise Henry
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Test simple 3 test with cellranger 3.0.2
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!53
Develop
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!51
Resolve "Add pytest to CI"
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!50
Resolve "Add pytest to CI"
,
!49
Resolve "Add pytest to CI"
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@@ -77,7 +77,7 @@ simple_3:
except
:
-
master
script
:
-
nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s1r1k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s1r1k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '
2.1.1
'
-
nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s1r1k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s1r1k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '
3.0.2
'
-
pytest -m count211
artifacts
:
name
:
"
$CI_JOB_NAME"
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