update runtime settings

.gitlab-ci.yml

@@ -36,7 +36,8 @@ simple_1:
     - branches
     - tags
   except:
-    - merge_requests
+    - develop
+    - master
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'three' --version '3.0.2'
   - pytest -m count302
@@ -56,7 +57,8 @@ simple_2:
   only:
     - branches
   except:
-    - merge_requests
+    - develop
+    - master
     - tags
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.1'
@@ -75,7 +77,10 @@ simple_2:
 detailed_1:
   stage: detailed
   only:
-    - merge_requests
+    - develop
+    - master
+  except:
+    - tags
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.0.2'
   - pytest -m count302
@@ -93,7 +98,10 @@ detailed_1:
 detailed_2:
   stage: detailed
   only:
-    - merge_requests
+    - develop
+    - master
+  except:
+    - tags
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.2'
   - pytest -m count302
@@ -111,7 +119,10 @@ detailed_2:
 detailed_3:
   stage: detailed
   only:
-    - merge_requests
+    - develop
+    - master
+  except:
+    - tags
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1'
   - pytest -m count211