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Commit dc2bdad6 authored by Jeremy Mathews's avatar Jeremy Mathews
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make valid yml file

parent d2b80f76
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4 merge requests!53Develop,!51Resolve "Add pytest to CI",!50Resolve "Add pytest to CI",!49Resolve "Add pytest to CI"
Pipeline #4472 failed with stages
in 10 minutes and 2 seconds
......@@ -32,8 +32,10 @@ astrocyte_check:
simple_1:
stage: simple
only: branches
except: master
only:
- branches
except:
- master
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'three' --version '3.0.2'
- pytest -m count302
......@@ -50,8 +52,10 @@ simple_1:
simple_2:
stage: simple
only: branches
except: master
only:
- branches
except:
- master
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.1'
- pytest -m count301
......@@ -68,8 +72,10 @@ simple_2:
simple_3:
stage: simple
only: branches
except: master
only:
- branches
except:
- master
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s1r500/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1'
- pytest -m count211
......@@ -86,7 +92,8 @@ simple_3:
detailed_1:
stage: detailed
only: master
only:
- master
except:
- tags
script:
......@@ -105,7 +112,8 @@ detailed_1:
detailed_2:
stage: detailed
only: master
only:
- master
except:
- tags
script:
......
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