add detailed 3

.gitlab-ci.yml

@@ -26,16 +26,14 @@ astrocyte_check:
   artifacts:
     expire_in: 2 days
   retry:
-    max: 2
+    max: 1
     when:
       - always
 
 simple_1:
   stage: simple
-  only:
-    - branches
   except:
-    - master
+    - tags
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'three' --version '3.0.2'
   - pytest -m count302
@@ -46,16 +44,14 @@ simple_1:
       - .nextflow.log
     expire_in: 2 days
   retry:
-    max: 2
+    max: 1
     when:
       - always
 
 simple_2:
   stage: simple
-  only:
-    - branches
   except:
-    - master
+    - tags
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.1'
   - pytest -m count301
@@ -66,19 +62,19 @@ simple_2:
       - .nextflow.log
     expire_in: 2 days
   retry:
-    max: 2
+    max: 1
     when:
       - always
 
-simple_3:
-  stage: simple
+detailed_1:
+  stage: detailed
   only:
-    - branches
+    - merge_requests
   except:
-    - master
+    - tags
   script:
-  - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s1r500/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1'
-  - pytest -m count211
+  - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'three' --version '3.0.2'
+  - pytest -m count302
   artifacts:
     name: "$CI_JOB_NAME"
     when: always
@@ -86,18 +82,18 @@ simple_3:
       - .nextflow.log
     expire_in: 2 days
   retry:
-    max: 2
+    max: 1
     when:
       - always
 
-detailed_1:
+detailed_2:
   stage: detailed
   only:
-    - master
+    - merge_requests
   except:
     - tags
   script:
-  - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'three' --version '3.0.2'
+  - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.2'
   - pytest -m count302
   artifacts:
     name: "$CI_JOB_NAME"
@@ -106,19 +102,19 @@ detailed_1:
       - .nextflow.log
     expire_in: 2 days
   retry:
-    max: 2
+    max: 1
     when:
       - always
 
-detailed_2:
+detailed_3:
   stage: detailed
   only:
-    - master
+    - branches
   except:
     - tags
   script:
-  - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.2'
-  - pytest -m count302
+  - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1'
+  - pytest -m count211
   artifacts:
     name: "$CI_JOB_NAME"
     when: always
@@ -126,6 +122,7 @@ detailed_2:
       - .nextflow.log
     expire_in: 2 days
   retry:
-    max: 2
+    max: 1
     when:
       - always
+