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Commit 275a0a70 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Only output multiqc html and put in dir

parent 34036959
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4 merge requests!53Develop,!47Resolve "Add MultiQC",!46Resolve "Add MultiQC",!44Add MultiQC to output. Add version and reference material. fix README
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......@@ -257,7 +257,7 @@ metricsSummary = metricsSummary211.mix(metricsSummary301, metricsSummary302)
// Generate MultiQC Report
process multiqc {
publishDir "$outDir/${task.process}", mode: 'copy'
publishDir "$outDir/${task.process}/$name", mode: 'copy'
module 'multiqc/1.7'
input:
......@@ -265,7 +265,7 @@ process multiqc {
file yamlPaths
output:
file "*" into mqcPaths
file "multiqc_report.html" into mqcPaths
script:
"""
......
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