Skip to content
Snippets Groups Projects
Commit 275a0a70 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

Only output multiqc html and put in dir

parent 34036959
Branches
Tags
4 merge requests!53Develop,!47Resolve "Add MultiQC",!46Resolve "Add MultiQC",!44Add MultiQC to output. Add version and reference material. fix README
Pipeline #4198 passed with stages
in 20 minutes
Hide whitespace changes
Inline Side-by-side
Showing
with 2 additions and 2 deletions
workflow/main.nf
+ 2
− 2
View file @ 275a0a70
...@@ -257,7 +257,7 @@ metricsSummary = metricsSummary211.mix(metricsSummary301, metricsSummary302) ...@@ -257,7 +257,7 @@ metricsSummary = metricsSummary211.mix(metricsSummary301, metricsSummary302)
// Generate MultiQC Report // Generate MultiQC Report
process multiqc { process multiqc {
publishDir "$outDir/${task.process}", mode: 'copy' publishDir "$outDir/${task.process}/$name", mode: 'copy'
module 'multiqc/1.7' module 'multiqc/1.7'
input: input:
...@@ -265,7 +265,7 @@ process multiqc { ...@@ -265,7 +265,7 @@ process multiqc {
file yamlPaths file yamlPaths
output: output:
file "*" into mqcPaths file "multiqc_report.html" into mqcPaths
script: script:
""" """
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment