Commits · c17b8a62e4275d1c5547b79468d490d6c0b2fb3a · GUDMAP_RBK / RNA-seq

Apr 22, 2020
- Add unit CI test for (new) inferMetadata · c17b8a62
  Gervaise Henry authored 4 years ago
  
  c17b8a62
Mar 30, 2020
- Used betterd CHRs for tests. · 622ebfca
  Jonathan Gesell authored 5 years ago
  
  622ebfca
Mar 27, 2020
- Update test_dedupReads.py · d0d886a4
  Jonathan Gesell authored 5 years ago
  
  d0d886a4
- Update test_dedupReads.py · f8ab64d0
  Jonathan Gesell authored 5 years ago
  
  f8ab64d0
- Update test_dedupReads.py · 2321e6cc
  Jonathan Gesell authored 5 years ago
  
  2321e6cc
- Update test_dedupReads.py · 12b9d87f
  Jonathan Gesell authored 5 years ago
  
  12b9d87f
- Update test_dedupReads.py to include split, testing chr1, chr2, chr8 · a06578ad
  Jonathan Gesell authored 5 years ago
  
  a06578ad
Mar 24, 2020
- Add unit test for downsampleData · 8e3cf6c4
  Gervaise Henry authored 5 years ago
  
  8e3cf6c4
Mar 12, 2020
- Fix sillier error in align unit ci pytest · 420cede9
  Gervaise Henry authored 5 years ago
  
  420cede9
- Fix silly error in align unit ci pytest · ac502364
  Gervaise Henry authored 5 years ago
  
  ac502364
- Fix deduped unit ci sorted bam/bai prefix · 1e50ff6e
  Gervaise Henry authored 5 years ago
  
  1e50ff6e
- Add bai test to dedup unit ci pytest · f50feedd
  Gervaise Henry authored 5 years ago
  
  f50feedd
- Fix bai in align unit ci pytest · c076037b
  Gervaise Henry authored 5 years ago
  
  c076037b
- Add unit test for inferMetadata · a2a809c7
  Gervaise Henry authored 5 years ago
  
  a2a809c7
Mar 08, 2020
- Add unit test for makeFeatureCounts · 88c55e12
  Gervaise Henry authored 5 years ago
  
  88c55e12
Feb 14, 2020
- Fix pytest for new getData unit · 50212074
  Gervaise Henry authored 5 years ago
  
  50212074
- Test bdbag fetch on text file · de33d175
  Gervaise Henry authored 5 years ago
  
  de33d175
Feb 07, 2020
- Added pytest for makeBigWig. · 9363735e
  Jonathan Gesell authored 5 years ago
  
  9363735e
Feb 04, 2020
- Fix fastqc pytest name · 645546fa
  Gervaise Henry authored 5 years ago
  
  645546fa
Feb 03, 2020
- Add CI for fastqc · 8f580cc7
  Gervaise Henry authored 5 years ago
  
  8f580cc7
Jan 30, 2020
- Cleanup some ci misses · 529dadea
  Gervaise Henry authored 5 years ago
  
  529dadea
- Updated output file names for unit test. · d16e6c86
  Jonathan Gesell authored 5 years ago
  
  d16e6c86
- Added unit testing · a28ab789
  Jonathan Gesell authored 5 years ago
  
  a28ab789
Jan 29, 2020
- Fix ci to use downsampled data · 0d58c090
  Gervaise Henry authored 5 years ago
  
  0d58c090
- Fetch references from s3 · 5e8def40
  Gervaise Henry authored 5 years ago
  
  5e8def40
Jan 28, 2020
- Remove line testing. As count_lines doesn't work for bam and bai files · 2333e8b4
  Venkat Malladi authored 5 years ago
  
  2333e8b4
- Fix the actual tests · e94986e1
  Venkat Malladi authored 5 years ago
  
  e94986e1
- Change single-end tests to reference correct experiment file. · 6b1e233a
  Venkat Malladi authored 5 years ago
  
  6b1e233a
- Update read comparison and decorator · dbdf865f
  Venkat Malladi authored 5 years ago
  
  dbdf865f
Jan 27, 2020
- Update test_alignReads.py · a3564b7c
  Jonathan Gesell authored 5 years ago
  
  a3564b7c
Jan 24, 2020
- Update workflow/tests/test_alignReads.py · 398747a6
  Jonathan Gesell authored 5 years ago
```
Deleted workflow/tests/test_align.py
```
  398747a6
- Updated test scripts. · de4d2b8b
  Jonathan Gesell authored 5 years ago
  
  de4d2b8b
Jan 23, 2020
- Added files necessary for CI of output files. · dda7cf97
  Jonathan Gesell authored 5 years ago
  
  dda7cf97
Jan 18, 2020
- Fix second trimData unit test · 4d88c335
  Gervaise Henry authored 5 years ago
  
  4d88c335
- Split unit test for trimData to 2 · 44a7326b
  Gervaise Henry authored 5 years ago
  
  44a7326b
Jan 15, 2020
- Combine trimData CI se/pe into 1 unit test · 947e7543
  Gervaise Henry authored 5 years ago
  
  947e7543
Jan 14, 2020
- Fix getData pytest · 05a8f290
  Gervaise Henry authored 5 years ago
  
  05a8f290
- Add pytest for trim · c7ea5cba
  Gervaise Henry authored 5 years ago
  
  c7ea5cba
- Add pytest for getData · 18667028
  Gervaise Henry authored 5 years ago
  
  18667028
- Add pytest for getBag · 9e1a4c88
  Gervaise Henry authored 5 years ago
  
  9e1a4c88