Test bdbag fetch on text file

.gitlab-ci.yml

 before_script:
-  - module add  python/3.6.1-2-anaconda
+  - module add  python/3.6.4-anaconda
   - pip install --user pytest-pythonpath==0.7.1 pytest-cov==2.5.1
   - module load singularity/3.0.2
   - module load nextflow/19.09.0
@@ -23,7 +23,7 @@ getData:
   script:
   - ln -sfn `readlink -e ./test_data/auth/cookies.txt` ~/.bdbag/deriva-cookies.txt
   - unzip ./test_data/bagit/Replicate_16-1ZX4
-  - singularity run 'docker://bicf/gudmaprbkfilexfer:1.3' sh ./workflow/scripts/bdbagFetch.sh Replicate_16-1ZX4 16-1ZX4 TEST
+  - singularity run 'docker://bicf/gudmaprbkfilexfer:1.3' bash ./workflow/scripts/bdbagFetch.sh Replicate_16-1ZX4 16-1ZX4 TEST
   - pytest -m getData
 
 parseMetadata:

workflow/tests/test_getData.py

@@ -11,4 +11,4 @@ test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
 @pytest.mark.getData
 def test_getData():
     assert os.path.exists(os.path.join(test_output_path, 'Replicate_16-1ZX4/bagit.txt'))
-    assert os.path.exists(os.path.join(test_output_path, '16-1ZX4.R1.fastq.gz'))
\ No newline at end of file
+    assert os.path.exists(os.path.join(test_output_path, 'Study_Q-Y4H0/data/assets/Study/Q-Y4H0/Experiment/Q-Y4BY/Replicate/Q-Y5F8/hMARIS_SIX2+_RiboDep#1.gene.rpkm.txt'))
\ No newline at end of file