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Commit a06578ad authored by Jonathan Gesell's avatar Jonathan Gesell
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Update test_dedupReads.py to include split, testing chr1, chr2, chr8

parent 2ee9ebdc
3 merge requests!37v0.0.1,!27Develop,!26Resolve "Chunk bam for parallel tin calculation"
Pipeline #6372 failed with stages
in 2 minutes and 19 seconds
......@@ -13,3 +13,9 @@ data_output_path = os.path.dirname(os.path.abspath(__file__)) + \
def test_dedupData():
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.bam.bai'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr1.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr1.bam.bai'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr2.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr2.bam.bai'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr8.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr8.bam.bai'))
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