From a06578adf6190d8a4e4440a83f80ee3c1659a849 Mon Sep 17 00:00:00 2001 From: Jonathan Gesell <jonathan.gesell@utsouthwestern.edu> Date: Fri, 27 Mar 2020 09:17:43 -0500 Subject: [PATCH] Update test_dedupReads.py to include split, testing chr1, chr2, chr8 --- workflow/tests/test_dedupReads.py | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/workflow/tests/test_dedupReads.py b/workflow/tests/test_dedupReads.py index 5ca60eb..b5ccb00 100644 --- a/workflow/tests/test_dedupReads.py +++ b/workflow/tests/test_dedupReads.py @@ -13,3 +13,9 @@ data_output_path = os.path.dirname(os.path.abspath(__file__)) + \ def test_dedupData(): assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.bam')) assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.bam.bai')) + assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr1.bam')) + assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr1.bam.bai')) + assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr2.bam')) + assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr2.bam.bai')) + assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr8.bam')) + assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chr8.bam.bai')) \ No newline at end of file -- GitLab