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Commit c076037b authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix bai in align unit ci pytest

parent 70e6fa19
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3 merge requests!37v0.0.1,!24Develop,!23Resolve "process_RSeQC"
......@@ -13,11 +13,11 @@ data_output_path = os.path.dirname(os.path.abspath(__file__)) + \
def test_alignData_se():
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.unal.gz'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.bai'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.bam.bai'))
@pytest.mark.alignData
def test_alignData_pe():
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.pe.unal.gz'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.pe.sorted.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.pe.sorted.bai'))
\ No newline at end of file
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.pe.bam.sorted.bai'))
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