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Commit 0d58c090 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix ci to use downsampled data

parent 5e8def40
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2 merge requests!37v0.0.1,!16Resolve "process_getRef"
Pipeline #5832 failed with stages
in 7 minutes and 58 seconds
......@@ -6,7 +6,7 @@ params.bdbag = "${baseDir}/../test_data/auth/cookies.txt"
//params.repRID = "16-1ZX4"
params.repRID = "Q-Y5JA"
params.refVersion = "0.0.1"
params.refMuVersion = "38.p6"
params.refMuVersion = "38.P6"
params.refHuVersion = "38.p12"
params.outDir = "${baseDir}/../output"
......
......@@ -10,10 +10,10 @@ test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
@pytest.mark.trimData
def test_trimData_se():
assert os.path.exists(os.path.join(test_output_path, '16-1ZX4_trimmed.fq.gz'))
assert os.path.exists(os.path.join(test_output_path, 'Q-Y5JA_1M.se_trimmed.fq.gz'))
@pytest.mark.trimData
def test_trimData_pe():
assert os.path.exists(os.path.join(test_output_path, 'Q-Y5JA_R1_val_1.fq.gz'))
assert os.path.exists(os.path.join(test_output_path, 'Q-Y5JA_R2_val_2.fq.gz'))
\ No newline at end of file
assert os.path.exists(os.path.join(test_output_path, 'Q-Y5JA_1M.pe_R1_val_1.fq.gz'))
assert os.path.exists(os.path.join(test_output_path, 'Q-Y5JA_1M.pe_R2_val_2.fq.gz'))
\ No newline at end of file
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