diff --git a/workflow/rna-seq.nf b/workflow/rna-seq.nf index c68208fa505a87ce1180de2f61095567ab1f392e..f36c6e36131912d924e0febb31bb2cb1fe77d84c 100755 --- a/workflow/rna-seq.nf +++ b/workflow/rna-seq.nf @@ -6,7 +6,7 @@ params.bdbag = "${baseDir}/../test_data/auth/cookies.txt" //params.repRID = "16-1ZX4" params.repRID = "Q-Y5JA" params.refVersion = "0.0.1" -params.refMuVersion = "38.p6" +params.refMuVersion = "38.P6" params.refHuVersion = "38.p12" params.outDir = "${baseDir}/../output" diff --git a/workflow/tests/test_trimData.py b/workflow/tests/test_trimData.py index 016a0109e55e9dd89ea3e7da6f59177ef81cafbc..a8f479afec7b0c97847179f5b7817987ee872a16 100644 --- a/workflow/tests/test_trimData.py +++ b/workflow/tests/test_trimData.py @@ -10,10 +10,10 @@ test_output_path = os.path.dirname(os.path.abspath(__file__)) + \ @pytest.mark.trimData def test_trimData_se(): - assert os.path.exists(os.path.join(test_output_path, '16-1ZX4_trimmed.fq.gz')) + assert os.path.exists(os.path.join(test_output_path, 'Q-Y5JA_1M.se_trimmed.fq.gz')) @pytest.mark.trimData def test_trimData_pe(): - assert os.path.exists(os.path.join(test_output_path, 'Q-Y5JA_R1_val_1.fq.gz')) - assert os.path.exists(os.path.join(test_output_path, 'Q-Y5JA_R2_val_2.fq.gz')) \ No newline at end of file + assert os.path.exists(os.path.join(test_output_path, 'Q-Y5JA_1M.pe_R1_val_1.fq.gz')) + assert os.path.exists(os.path.join(test_output_path, 'Q-Y5JA_1M.pe_R2_val_2.fq.gz')) \ No newline at end of file