Resolve "process_getRef"

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PR checklist

• This comment contains a description of changes (with reason)
• If you've fixed a bug or added code that should be tested, add tests!

• Close issue
  Closes #29 (closed)

/cc @ghenry @venkat.malladi

changed milestone to %v0.0.1

added Doing label

enabled an automatic merge when the pipeline for f49af45e succeeds

added 4 commits

• 74ed9ec3 - Fix passing of ends to stranded parsing
• 373edb3a - Fix args ends passage
• 034a80c7 - Use sampled fastqs for align unit ci
• f388dfc1 - Fix pytest for align

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added 2 commits

• 131cb309 - Fix passing of ends to stranded parsing
• f6930fc6 - Fix args ends passage

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added 1 commit

• 529dadea - Cleanup some ci misses

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added 1 commit

• 6bedccc4 - Move endsManual in parseMetadata process from spike to stranded

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assigned to @venkat.malladi

marked the checklist item This comment contains a description of changes (with reason) as completed

changed the description

added 1 commit

• 0bf42fdf - Fix specie/s in CI

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marked the checklist item If you've fixed a bug or added code that should be tested, add tests! as completed

resolved all discussions

marked the checklist item *Close issue* as completed

enabled an automatic merge when the pipeline for 0bf42fdf succeeds

mentioned in commit b1770e35

merged