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Commit d0d886a4 authored by Jonathan Gesell's avatar Jonathan Gesell
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Update test_dedupReads.py

parent f8ab64d0
3 merge requests!37v0.0.1,!27Develop,!26Resolve "Chunk bam for parallel tin calculation"
Pipeline #6387 passed with stages
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workflow/tests/test_dedupReads.py
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View file @ d0d886a4
......@@ -13,9 +13,9 @@ data_output_path = os.path.dirname(os.path.abspath(__file__)) + \
def test_dedupData():
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.bam.bai'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chrNC_000001.11.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chrNC_000001.11.bam.bai'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chrNC_000002.12.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chrNC_000002.12.bam.bai'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chrNC_000019.10.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.deduped.chrNC_000019.10.bam.bai'))
\ No newline at end of file
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.chrNC_000001.11.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.chrNC_000001.11.bam.bai'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.chrNC_000002.12.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.chrNC_000002.12.bam.bai'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.chrNC_000019.10.bam'))
assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA_1M.se.sorted.deduped.chrNC_000019.10.bam.bai'))
\ No newline at end of file
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