Change single-end tests to reference correct experiment file.

workflow/tests/test_alignReads.py

@@ -14,17 +14,17 @@ logs_output_path = os.path.dirname(os.path.abspath(__file__)) + \
 def test_alignData_se():
 	assert os.path.exists(os.path.join(data_output_path, '16-1ZX4.unal.gz'))
 	assert utils.count_lines(os.path.join(data_output_path, '16-1ZX4.unal.gz')) == 3070528
-	assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.bam'))
-	assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.sorted.bam')) == 5805611
-	assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.bai'))
-	assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.sorted.bai')) == 12824
+	assert os.path.exists(os.path.join(data_output_path, '16-1ZX4.sorted.bam'))
+	assert utils.count_lines(os.path.join(data_output_path, '16-1ZX4.sorted.bam')) == 5805611
+	assert os.path.exists(os.path.join(data_output_path, '16-1ZX4.sorted.bai'))
+	assert utils.count_lines(os.path.join(data_output_path, '16-1ZX4.sorted.bai')) == 12824
 
 @pytest.mark.alignData
 def test_alignData_pe():
 	assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.unal.gz'))
 	assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.unal.gz')) == 0
 	assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.bam'))
-	assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.sorted.bam')) == 5805611
+	assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.sorted.bam')) == 4246125
 	assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.bai'))
 	assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.sorted.bai')) == 12824