From 6b1e233a561709273a695d28c5dc7a948b74b0a5 Mon Sep 17 00:00:00 2001 From: Venkat Malladi <venkat.malladi@utsouthwestern.edu> Date: Tue, 28 Jan 2020 08:57:03 -0600 Subject: [PATCH] Change single-end tests to reference correct experiment file. --- workflow/tests/test_alignReads.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/workflow/tests/test_alignReads.py b/workflow/tests/test_alignReads.py index c88f5a0..a7fe042 100644 --- a/workflow/tests/test_alignReads.py +++ b/workflow/tests/test_alignReads.py @@ -14,17 +14,17 @@ logs_output_path = os.path.dirname(os.path.abspath(__file__)) + \ def test_alignData_se(): assert os.path.exists(os.path.join(data_output_path, '16-1ZX4.unal.gz')) assert utils.count_lines(os.path.join(data_output_path, '16-1ZX4.unal.gz')) == 3070528 - assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.bam')) - assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.sorted.bam')) == 5805611 - assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.bai')) - assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.sorted.bai')) == 12824 + assert os.path.exists(os.path.join(data_output_path, '16-1ZX4.sorted.bam')) + assert utils.count_lines(os.path.join(data_output_path, '16-1ZX4.sorted.bam')) == 5805611 + assert os.path.exists(os.path.join(data_output_path, '16-1ZX4.sorted.bai')) + assert utils.count_lines(os.path.join(data_output_path, '16-1ZX4.sorted.bai')) == 12824 @pytest.mark.alignData def test_alignData_pe(): assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.unal.gz')) assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.unal.gz')) == 0 assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.bam')) - assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.sorted.bam')) == 5805611 + assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.sorted.bam')) == 4246125 assert os.path.exists(os.path.join(data_output_path, 'Q-Y5JA.sorted.bai')) assert utils.count_lines(os.path.join(data_output_path, 'Q-Y5JA.sorted.bai')) == 12824 -- GitLab