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Resolve "process_align"

Jonathan Gesell requested to merge 4-align into develop

Alignment step using HiSat2

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  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • is updated
  • Close issue
    Closes #4 (closed) Addresses alignData: add samtools to convert sam to bam and sort from #21 (closed)

/cc @ghenry @venkat.malladi /assign @ghenry

Edited by Jonathan Gesell

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