Code Review
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Duplicate repRID not necessary if not used as input in processes (@s181706 in #4 (closed). & @ghenry in #20 (closed) ) -
All processes: more readable scripts (newlines and maybe comments) (@ghenry in #20 (closed)) -
publishDir mode symlink to copy (@s181706 in #4 (closed) & @ghenry in #20 (closed)) -
trimData: Remove ${ncore} limiter... give it all cores avail (@s181706 in #4 (closed) and @ghenry in #20 (closed)) -
Min 8 CPUs to trimData in configs (@ghenry in #29 (closed) f03e0077) -
Change ref GTF to Encode versions and append ERCC to bottom of grf (@s181706 #22 (closed)) -
alignData: add samtools to convert sam to bam and sort (@s181706 #4 (closed)) -
Split unit test (CI) for trimData into 2 tests (@ghenry in #20 (closed))