Commits · 7d2108a54931b02f70b2d463072ad0cdfac02be5 · GUDMAP_RBK / RNA-seq

Mar 20, 2020
- Corrected typo in makeFeatureCounts test. · 7d2108a5
  Jonathan Gesell authored 5 years ago
  
  7d2108a5
- Code review changes/corrections · 28f1a97f
  Jonathan Gesell authored 5 years ago
  
  28f1a97f
Mar 14, 2020
- Fix mkdir bdbag in ci · 68224f63
  Gervaise Henry authored 5 years ago
  
  68224f63
Mar 13, 2020
- Add process log files · 1f7e1dc9
  Gervaise Henry authored 5 years ago
  
  1f7e1dc9
Mar 12, 2020
- Fix bam indexing output name to .bam.bai · 70e6fa19
  Gervaise Henry authored 5 years ago
  
  70e6fa19
- Fix tin input in unit CO · 3e7d2beb
  Gervaise Henry authored 5 years ago
  
  3e7d2beb
- Add unit test for inferMetadata · a2a809c7
  Gervaise Henry authored 5 years ago
  
  a2a809c7
Mar 08, 2020
- Fix path of script for unit test · b36bb08e
  Gervaise Henry authored 5 years ago
  
  b36bb08e
- Fix docker handle in unit test · 2ab086d2
  Gervaise Henry authored 5 years ago
  
  2ab086d2
- Add unit test for makeFeatureCounts · 88c55e12
  Gervaise Henry authored 5 years ago
  
  88c55e12
Mar 06, 2020
- Add ulimit to ci integration · 899957ed
  Gervaise Henry authored 5 years ago
  
  899957ed
Feb 18, 2020
- Update unit for getRef to use local refs · 75486483
  Gervaise Henry authored 5 years ago
  
  75486483
Feb 17, 2020
- Make integration_pe create dag and make artifact · 0d895b2c
  Gervaise Henry authored 5 years ago
  
  0d895b2c
Feb 14, 2020
- Add missing gitlab-ci.yml for new getData · 841dcea3
  Gervaise Henry authored 5 years ago
  
  841dcea3
- Test bdbag fetch on text file · de33d175
  Gervaise Henry authored 5 years ago
  
  de33d175
- Fix ci lint · 85bd9077
  Gervaise Henry authored 5 years ago
  
  85bd9077
- CI unit: getRef cp local, getData test version of script to fetch txt · 61cc48e6
  Gervaise Henry authored 5 years ago
  
  61cc48e6
Feb 12, 2020
- Update .gitlab-ci.yml · ff7f8483
  Jonathan Gesell authored 5 years ago
  
  ff7f8483
- Update .gitlab-ci.yml · 3dff84f8
  Jonathan Gesell authored 5 years ago
  
  3dff84f8
Feb 11, 2020
- Update the local ref location for CI · 4d598c06
  Gervaise Henry authored 5 years ago
  
  4d598c06
Feb 10, 2020
- Corrected typo in .gitlab-ci.yml · 73a6b3d6
  Jonathan Gesell authored 5 years ago
  
  73a6b3d6
- Update .gitlab-ci.yml · 819e87c2
  Jonathan Gesell authored 5 years ago
  
  819e87c2
Feb 07, 2020
- Update .gitlab-ci.yml · 5d2d6ef6
  Jonathan Gesell authored 5 years ago
  
  5d2d6ef6
- Update .gitlab-ci.yml · 9f4b63ed
  Jonathan Gesell authored 5 years ago
  
  9f4b63ed
- Update .gitlab-ci.yml to include makeBigWig step. · 26d11700
  Jonathan Gesell authored 5 years ago
  
  26d11700
Feb 03, 2020
- Fix outdir for fastqc ci and process · 4ca7cd19
  Gervaise Henry authored 5 years ago
  
  4ca7cd19
- Write fastqc output in current dir for ci · 2735b0c4
  Gervaise Henry authored 5 years ago
  
  2735b0c4
- Add CI for fastqc · 8f580cc7
  Gervaise Henry authored 5 years ago
  
  8f580cc7
Jan 30, 2020
- Fix specie/s in CI · 0bf42fdf
  Gervaise Henry authored 5 years ago
  
  0bf42fdf
- Cleanup some ci misses · 529dadea
  Gervaise Henry authored 5 years ago
  
  529dadea
- RE-specified the output directory. · 91a9ea5f
  Jonathan Gesell authored 5 years ago
  
  91a9ea5f
- Corrected file names · 30349d74
  Jonathan Gesell authored 5 years ago
  
  30349d74
- Corrected input and output BAM file paths. · f2dd8009
  Jonathan Gesell authored 5 years ago
  
  f2dd8009
- Update .gitlab-ci.yml, removed variable IDs. · 06790eb4
  Jonathan Gesell authored 5 years ago
  
  06790eb4
- Added unit testing · a28ab789
  Jonathan Gesell authored 5 years ago
  
  a28ab789
- Put change to parseMeta script to ci also · f49af45e
  Gervaise Henry authored 5 years ago
  
  f49af45e
Jan 29, 2020
- Fix ci yml formal · f03e0077
  Gervaise Henry authored 5 years ago
  
  f03e0077
- Fix mus ref loc name · a0cd39f7
  Gervaise Henry authored 5 years ago
  
  a0cd39f7
- Fetch references from s3 · 5e8def40
  Gervaise Henry authored 5 years ago
  
  5e8def40
Jan 24, 2020
- Update .gitlab-ci.yml · c1554d3c
  Jonathan Gesell authored 5 years ago
  
  c1554d3c