Skip to content
Snippets Groups Projects
Commit 85bd9077 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

Fix ci lint

parent 61cc48e6
Branches
Tags
3 merge requests!37v0.0.1,!24Develop,!23Resolve "process_RSeQC"
Pipeline #6006 canceled with stages
in 25 minutes and 56 seconds
......@@ -5,7 +5,7 @@ before_script:
- module load nextflow/19.09.0
- ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/* ./test_data/
- mkdir -p ~/.deriva
- mkdir -p ~/.bdbag
- mkdir -p ~/.bdbatestg
stages:
- unit
......@@ -38,8 +38,6 @@ parseMetadata:
getRef:
stage: unit
script:
- #singularity run 'docker://bicf/awscli:1.1' aws s3 ls s3://bicf-references/mouse/0.0.1/GRCm38.P6
- #singularity run 'docker://bicf/awscli:1.1' aws s3 ls s3://bicf-references/human/0.0.1/GRCh38.p12
- mkdir -p hu
- mkdir -p mo
- cp -R /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/hisat2 ./hu/
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment