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Commit 85bd9077 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix ci lint

parent 61cc48e6
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3 merge requests!37v0.0.1,!24Develop,!23Resolve "process_RSeQC"
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.gitlab-ci.yml
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...@@ -5,7 +5,7 @@ before_script: ...@@ -5,7 +5,7 @@ before_script:
- module load nextflow/19.09.0 - module load nextflow/19.09.0
- ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/* ./test_data/ - ln -sfn /project/BICF/BICF_Core/shared/gudmap/test_data/* ./test_data/
- mkdir -p ~/.deriva - mkdir -p ~/.deriva
- mkdir -p ~/.bdbag - mkdir -p ~/.bdbatestg
stages: stages:
- unit - unit
...@@ -38,8 +38,6 @@ parseMetadata: ...@@ -38,8 +38,6 @@ parseMetadata:
getRef: getRef:
stage: unit stage: unit
script: script:
- #singularity run 'docker://bicf/awscli:1.1' aws s3 ls s3://bicf-references/mouse/0.0.1/GRCm38.P6
- #singularity run 'docker://bicf/awscli:1.1' aws s3 ls s3://bicf-references/human/0.0.1/GRCh38.p12
- mkdir -p hu - mkdir -p hu
- mkdir -p mo - mkdir -p mo
- cp -R /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/hisat2 ./hu/ - cp -R /project/BICF/BICF_Core/shared/gudmap/references/GRCh38.p12.v31/hisat2 ./hu/
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