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Commit 2735b0c4 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Write fastqc output in current dir for ci

parent 2503d937
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2 merge requests!37v0.0.1,!18Resolve "process_fastqc"
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.gitlab-ci.yml
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......@@ -70,7 +70,7 @@ dedupData:
fastqc:
stage: unit
script:
- singularity run 'docker://bicf/fastqc:2.0.0' ./test_data/fastq/small/Q-Y5JA_1M.R1.fastq.gz
- singularity run 'docker://bicf/fastqc:2.0.0' ./test_data/fastq/small/Q-Y5JA_1M.R1.fastq.gz .
- pytest -m fastqc
integration_se:
......
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