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Created with Raphaël 2.2.014Aug1312111087654331Jul3023151420May13116542130Apr27252422732130Mar2726242321201918161514131298628Feb18171514121110743230Jan29282724232221201918171514136311Dec9325Nov2015141186431Oct30292823161511812SepUpdate dagUpdate changelogOutput tpm tableRemove resume from study run (only 1 resume per folder allowed)Add resume to by studyRevert study split to 5 parallel runsRevert study split to 5 parallel runs 15sec breakTurn off run logsRemove parallelization of trim_galoreRun getData on superFix getRefs to use superFix splitStudy for slurmRun all getRefs on super (runniung by study overutilizes local)Allow study script to run on clusterIncrease delay between study initiated runs to 30sChange unit test for trim to match new settingMake by study script run nextflow with quiet flagRemove Illumina addapter trim restriction, set to default (auto) and limit cores to 4Put 10sec delay between study launch + 25 parallelAdd unit test for outputBagAdd inital output bag creationOuput inputBagMerge branch 'develop' into 'master'v0.0.1v0.0.1Version to 0.0.1Merge branch 'new.qc.out' into 'develop'Convert string to int for range checking in consistency testChange consistence test from exact match to within 1/100,000 change from expectedUpdate dagConvert gene symbols to EntrezID in count/tpm tableAdd instructions for running from study RIDAdd scripts to run from study RIDAdd rounding to numbers in multiqc tableFix tin table in multiqcRemove quotes and colons from multiqc custom tablesAdd quotes to multiqc tablesFix raw read outputFix raw count calculationFix raw read count to R1Extract raw readsRemove dummy fastqc