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Commit c1554d3c authored by Jonathan Gesell's avatar Jonathan Gesell
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Update .gitlab-ci.yml

parent 398747a6
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2 merge requests!37v0.0.1,!15Resolve "process_align"
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......@@ -53,7 +53,7 @@ alignReads:
- singularity run 'docker://bicf/gudmaprbkaligner:2.0.0' samtools view -1 -@ `nproc` -F 4 -F 8 -F 256 -o 16-1ZX4.bam 16-1ZX4.sam
- singularity run 'docker://bicf/gudmaprbkaligner:2.0.0' samtools sort -@ `nproc` -O BAM -o 16-1ZX4.sorted.bam 16-1ZX4.bam
- singularity run 'docker://bicf/gudmaprbkaligner:2.0.0' samtools index -@ `nproc` -b 16-1ZX4.sorted.bam 16-1ZX4.sorted.bai
- pytest -m alignReads
- pytest -m alignData
integration_se:
stage: integration
......
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