From c1554d3c48a9e4d9918c765dfe5432d741f4c39d Mon Sep 17 00:00:00 2001
From: Jonathan Gesell <jonathan.gesell@utsouthwestern.edu>
Date: Fri, 24 Jan 2020 15:54:31 -0600
Subject: [PATCH] Update .gitlab-ci.yml

---
 .gitlab-ci.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index c31b9dc..6ea53a7 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -53,7 +53,7 @@ alignReads:
   - singularity run 'docker://bicf/gudmaprbkaligner:2.0.0' samtools view -1 -@ `nproc` -F 4 -F 8 -F 256 -o 16-1ZX4.bam 16-1ZX4.sam
   - singularity run 'docker://bicf/gudmaprbkaligner:2.0.0' samtools sort -@ `nproc` -O BAM -o 16-1ZX4.sorted.bam 16-1ZX4.bam
   - singularity run 'docker://bicf/gudmaprbkaligner:2.0.0' samtools index -@ `nproc` -b 16-1ZX4.sorted.bam 16-1ZX4.sorted.bai
-  - pytest -m alignReads
+  - pytest -m alignData
 
 integration_se:
   stage: integration
-- 
GitLab