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Commit 819e87c2 authored by Jonathan Gesell's avatar Jonathan Gesell
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Update .gitlab-ci.yml

parent bbaa391b
2 merge requests!37v0.0.1,!19Resolve "process_makeBigWig"
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...@@ -72,7 +72,7 @@ dedupData: ...@@ -72,7 +72,7 @@ dedupData:
makeBigWig: makeBigWig:
stage: unit stage: unit
script: script:
- singularity run 'docker://bicf/deeptools3.3:2.0.0' bamCoverage -p `nproc` -b ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam -o ./test_data/bam/small/Q-Y5JA_1M.se.bw - singularity run 'docker://bicf/deeptools3.3:2.0.0' bamCoverage -p `nproc` -b ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam -o Q-Y5JA_1M.se.bw
- pytest -m makeBigWig - pytest -m makeBigWig
fastqc: fastqc:
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