diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index f5326303ed00608fac87dcf943a2e66baa520d1f..a5b59948d9f0b74838f13abf72b75309bedfb7c0 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -72,7 +72,7 @@ dedupData: makeBigWig: stage: unit script: - - singularity run 'docker://bicf/deeptools3.3:2.0.0' bamCoverage -p `nproc` -b ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam -o ./test_data/bam/small/Q-Y5JA_1M.se.bw + - singularity run 'docker://bicf/deeptools3.3:2.0.0' bamCoverage -p `nproc` -b ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam -o Q-Y5JA_1M.se.bw - pytest -m makeBigWig fastqc: