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Commit 5d2d6ef6 authored by Jonathan Gesell's avatar Jonathan Gesell
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Update .gitlab-ci.yml

parent 9f4b63ed
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2 merge requests!37v0.0.1,!19Resolve "process_makeBigWig"
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......@@ -69,7 +69,7 @@ dedupData:
- singularity run 'docker://bicf/gudmaprbkdedup:2.0.0' samtools index -@ `nproc` -b ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bai
- pytest -m dedupData
makeBigWig
makeBigWig:
stage: unit
script:
- singularity run 'docker://bicf/deeptools3.3:2.0.0' bamCoverage -p `nproc` -b ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam -o ./test_data/bam/small/Q-Y5JA_1M.se.bw
......
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