From 5d2d6ef6313e13f209ab37b8a7cf961fde27feb1 Mon Sep 17 00:00:00 2001 From: Jonathan Gesell <jonathan.gesell@utsouthwestern.edu> Date: Fri, 7 Feb 2020 16:30:18 -0600 Subject: [PATCH] Update .gitlab-ci.yml --- .gitlab-ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 1c66917..f532630 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -69,7 +69,7 @@ dedupData: - singularity run 'docker://bicf/gudmaprbkdedup:2.0.0' samtools index -@ `nproc` -b ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bai - pytest -m dedupData -makeBigWig +makeBigWig: stage: unit script: - singularity run 'docker://bicf/deeptools3.3:2.0.0' bamCoverage -p `nproc` -b ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam -o ./test_data/bam/small/Q-Y5JA_1M.se.bw -- GitLab