diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 1c6691760f42da9d2d7d194272f2da6bf85af9b1..f5326303ed00608fac87dcf943a2e66baa520d1f 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -69,7 +69,7 @@ dedupData: - singularity run 'docker://bicf/gudmaprbkdedup:2.0.0' samtools index -@ `nproc` -b ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bai - pytest -m dedupData -makeBigWig +makeBigWig: stage: unit script: - singularity run 'docker://bicf/deeptools3.3:2.0.0' bamCoverage -p `nproc` -b ./test_data/bam/small/Q-Y5JA_1M.se.sorted.deduped.bam -o ./test_data/bam/small/Q-Y5JA_1M.se.bw