Commits · 5883960df56002784120e4fa1abd916ad81d30bb · GUDMAP_RBK / RNA-seq · GitLab

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Mar 02, 2021
- Add singularity cache to every singularity run command in ci · 5883960d
  Gervaise Henry authored 4 years ago
  
  5883960d
- Add singularity cache to before script in ci · 3cf19393
  Gervaise Henry authored 4 years ago
  
  3cf19393
- Add singularity cache to before script in ci · b53b14cf
  Gervaise Henry authored 4 years ago
  
  b53b14cf
- Try to ignore err from seqtk version extraction · 43153b59
  Gervaise Henry authored 4 years ago
  
  43153b59
- Fix seqtk version extraction · 362879d3
  Gervaise Henry authored 4 years ago
  
  362879d3
- Try and fix seqtk version collection in unit test · 5a86b737
  Gervaise Henry authored 4 years ago
  
  5a86b737
- Fix downsample ci · fcab3193
  Gervaise Henry authored 4 years ago
  
  fcab3193
- Add seqtk to references · 36caf093
  Gervaise Henry authored 4 years ago
  
  36caf093
Feb 24, 2021
- Fix nf reference in ci · 94d3aaaa
  Gervaise Henry authored 4 years ago
  
  94d3aaaa
Feb 23, 2021
- Add back mkdir -p in seqwho unit test · 6e2c01a8
  Gervaise Henry authored 4 years ago
  
  6e2c01a8
- Try removing ./ from seqwho -f in unit test · 91930b4a
  Gervaise Henry authored 4 years ago
  
  91930b4a
- Make dummy dir for plots · 6b2a74d6
  Gervaise Henry authored 4 years ago
  
  6b2a74d6
- Fix seqwho version collection in ci · 7b90b9dc
  Gervaise Henry authored 4 years ago
  
  7b90b9dc
- Use datahub as source for integration_se ci · 3ce1ddf7
  Gervaise Henry authored 4 years ago
  
  3ce1ddf7
- Fix ci lint · ba58c650
  Gervaise Henry authored 4 years ago
  
  ba58c650
- Replace species inference with seqwho · 634fd8a3
  Gervaise Henry authored 4 years ago
  
  634fd8a3
Feb 19, 2021
- Change nextflow run locations for CI to root · 0e05309f
  Gervaise Henry authored 4 years ago
  
  0e05309f
- Add test for seq type failure · 50715724
  Gervaise Henry authored 4 years ago
  
  50715724
Jan 29, 2021
- Change spike override to true/false · 04dbe532
  Gervaise Henry authored 4 years ago
  
  04dbe532
Jan 28, 2021
- Fix spike override ci pytest · f36d728b
  Gervaise Henry authored 4 years ago
  
  f36d728b
- Add multiqc html to ci artifacts for override tests · 8859d7e9
  Gervaise Henry authored 4 years ago
  
  8859d7e9
- Fix spike override test · 63fbe5e4
  Gervaise Henry authored 4 years ago
  
  63fbe5e4
Jan 27, 2021
- Change replicates for metadata overrides · 2ddefb95
  Gervaise Henry authored 4 years ago
  
  2ddefb95
- Update reps used for override metadata · 6e617062
  Gervaise Henry authored 4 years ago
  
  6e617062
- Make tracking upload option · df96927b
  Gervaise Henry authored 4 years ago
  
  df96927b
- Update pytest to utilize params · 1d912493
  Gervaise Henry authored 4 years ago
  
  1d912493
- Update pytests · a32879db
  Gervaise Henry authored 4 years ago
  
  a32879db
Jan 26, 2021
- Revert SE integration test and server for all integrations · 37bec34c
  Gervaise Henry authored 4 years ago
  
  37bec34c
- Change replicate for SE integration · 349cbde4
  Gervaise Henry authored 4 years ago
  
  349cbde4
- Add new py tests for integration and override · ecd4e76f
  Gervaise Henry authored 4 years ago
  
  ecd4e76f
- Add force params for stranded and spike · 59cb654a
  Gervaise Henry authored 4 years ago
  
  59cb654a
Jan 25, 2021
- Temporarily change CI integration tests to use dev server (staging doesn't have model changes) · c4c258bf
  Gervaise Henry authored 4 years ago
  
  c4c258bf
Jan 20, 2021
- Fix Single Read in CI · 52c66590
  Gervaise Henry authored 4 years ago
  
  52c66590
- Add back ends manual to parse ci unit · c36fec03
  Gervaise Henry authored 4 years ago
  
  c36fec03
- Add back ends manual to ci unit for parse, but manual · ded8b61b
  Gervaise Henry authored 4 years ago
  
  ded8b61b
- Add unexpected meta and fastq structure error ci integration tests · f83a3d8c
  Gervaise Henry authored 4 years ago
  
  f83a3d8c
- Remove ends manual from parse metadata unit ci · 8f5efffa
  Gervaise Henry authored 4 years ago
  
  8f5efffa
Jan 15, 2021
- Remove deriva from the ci. · 282d3c11
  Venkat Malladi authored 4 years ago
  
  282d3c11
Jan 14, 2021
- Add ambiguous species, trunkated fastq, R1/R2 mismatch to integration tests · 4d111e92
  Gervaise Henry authored 4 years ago
  
  4d111e92
Jan 09, 2021
- Add median TIN to mRNA_QC table · ac1c64c4
  Gervaise Henry authored 4 years ago
  
  ac1c64c4