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Commit c36fec03 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Add back ends manual to parse ci unit

parent ded8b61b
2 merge requests!65Develop,!64Resolve "samtools sort: couldn't allocate memory for bam_mem"
Pipeline #9059 canceled with stages
......@@ -114,7 +114,7 @@ parseMetadata:
- spike=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parse_meta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p spike)
- species=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parse_meta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p species)
- readLength=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parse_meta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p readLength)
- echo -e "${endsMeta},${endsRaw},${stranded},${spike},${species},${readLength},${exp},${study},${rep}" > design.csv
- echo -e "${endsMeta},${endsRaw},${endsManual},${stranded},${spike},${species},${readLength},${exp},${study},${rep}" > design.csv
- pytest -m parseMetadata
artifacts:
name: "$CI_JOB_NAME"
......
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