diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0835d45e564739f6108c2cdc937ce185221376d8..c2b63ce58bde32bc80c7bfbd5ee2792bad99fdb4 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -114,7 +114,7 @@ parseMetadata:
   - spike=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parse_meta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p spike)
   - species=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parse_meta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p species)
   - readLength=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parse_meta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p readLength)
-  - echo -e "${endsMeta},${endsRaw},${stranded},${spike},${species},${readLength},${exp},${study},${rep}" > design.csv
+  - echo -e "${endsMeta},${endsRaw},${endsManual},${stranded},${spike},${species},${readLength},${exp},${study},${rep}" > design.csv
   - pytest -m parseMetadata
   artifacts:
     name: "$CI_JOB_NAME"