From c36fec03172a3f577aa0771ad71282ae2ed02ff0 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Wed, 20 Jan 2021 01:23:35 -0600
Subject: [PATCH] Add back ends manual to parse ci unit
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0835d45..c2b63ce 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -114,7 +114,7 @@ parseMetadata:
- spike=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parse_meta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p spike)
- species=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parse_meta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p species)
- readLength=$(singularity run 'docker://gudmaprbk/python3:1.0.0' python3 ./workflow/scripts/parse_meta.py -r Replicate_RID -m "./test_data/meta/metaTest.csv" -p readLength)
- - echo -e "${endsMeta},${endsRaw},${stranded},${spike},${species},${readLength},${exp},${study},${rep}" > design.csv
+ - echo -e "${endsMeta},${endsRaw},${endsManual},${stranded},${spike},${species},${readLength},${exp},${study},${rep}" > design.csv
- pytest -m parseMetadata
artifacts:
name: "$CI_JOB_NAME"
--
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