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Resolve "samtools sort: couldn't allocate memory for bam_mem"

Gervaise Henry requested to merge 108-samtools.mem into develop

Fixes some newly discovered metadata errors.
Has been tested with --upload false
Testing overnight (with `--upload true --server dev

  • W-RCGG: submitted stranded/spike = blank & have fastq's not matching convention
  • 14-3R4R: submitted stranded/spike = unspecified
  • Q-Y5HT: fastq structure error (fastq+bam concatenation)
  • W-RB84: no errors

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • [ ] Documentation in docs is updated
  • Replace dag.png with the most recent CI pipeline integrated_pe artifact
  • [ ] Replace software_versions_mqc.yaml with the most recent CI pipeline generateVersions artifact
  • [ ] Replace software_references_mqc.yaml with the most recent CI pipeline generateVersions artifact
  • is updated
  • [ ] is updated
  • [ ] is updated with new contributors
  • [ ] Docker images moved to production release and changed in pipeline
  • [ ] Docker images used in the CI unit tests match those used in pipeline

/cc @ghenry @venkat.malladi

Edited by Gervaise Henry

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