Resolve "samtools sort: couldn't allocate memory for bam_mem"
Fixes some newly discovered metadata errors.
Has been tested with --upload false
Testing overnight (with `--upload true --server dev
- W-RCGG: submitted stranded/spike = blank & have fastq's not matching convention
- 14-3R4R: submitted stranded/spike = unspecified
- Q-Y5HT: fastq structure error (fastq+bam concatenation)
- W-RB84: no errors
PR checklist
- This comment contains a description of changes (with reason)
- If you've fixed a bug or added code that should be tested, add tests!
[ ] Documentation indocs
is updated- Replace dag.png with the most recent CI pipeline integrated_pe artifact
[ ] Replace software_versions_mqc.yaml with the most recent CI pipeline generateVersions artifact[ ] Replace software_references_mqc.yaml with the most recent CI pipeline generateVersions artifact-
CHANGELOG.md
is updated [ ]README.md
is updated[ ]LICENSE.md
is updated with new contributors[ ] Docker images moved to production release and changed in pipeline[ ] Docker images used in the CI unit tests match those used in pipeline
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Close issue
Closes #105 (closed) Closes #106 (closed) Closes #107 (closed) Closes #108 (closed) Closes #109 (closed)