Closed
Milestone
Jan 17, 2021–Feb 8, 2021
v2.0.0
Milestone ID: 124
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18
- Fix datahub fetch of references
- Fastq files don't match expected pattern
- Ambiguous species & fastq structure submits blank status detail
- Has_Strand_Specific_Information changed to Strandedness
- Sequencing_Type column change to Experiment_Type
- Add forward/reverse as expected vals for stranded
- New logic for outputBag upload
- Create blank mRNA_QC on matadata/fastq error
- Change Single Read to Single End for submitted endness
- Files not matching current fastq naming convention
- samtools sort: couldn't allocate memory for bam_mem
- bam file in fastq file
- unspecified is found in spike-in metadata
- unspecified in Strand information
- Add overrides for other metadata
- Detect truncation errors of fastq's
- Add param option for tracking db uploads
- Change yes/no metadata to bool
