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Commit 349cbde4 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Change replicate for SE integration

parent 4f9bc352
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2 merge requests!68Develop,!67Resolve "Change Single Read to Single End for submitted endness"
Pipeline #9138 failed with stages
in 5 hours, 27 minutes, and 55 seconds
......@@ -664,7 +664,7 @@ integration_se:
script:
- hostname
- ulimit -a
- nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-1ZX4 --source dev --upload true -with-dag dag.png --dev false --ci true -with-report ./SE_report.html
- nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID 16-3EMJ --source dev --upload true -with-dag dag.png --dev false --ci true -with-report ./SE_report.html
- find . -type f -name "multiqc_data.json" -exec cp {} ./SE_multiqc_data.json \;
- pytest -m completionIntegration_se
artifacts:
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