Commits · 5883960df56002784120e4fa1abd916ad81d30bb · GUDMAP_RBK / RNA-seq

Mar 02, 2021
- Add singularity cache to every singularity run command in ci · 5883960d
  Gervaise Henry authored 4 years ago
  
  5883960d
- Add singularity cache to before script in ci · 3cf19393
  Gervaise Henry authored 4 years ago
  
  3cf19393
- Add singularity cache to before script in ci · b53b14cf
  Gervaise Henry authored 4 years ago
  
  b53b14cf
- Update link from version report to wiki · e10247c7
  Gervaise Henry authored 4 years ago
  
  e10247c7
- Add new references to doc · ef3acdb0
  Gervaise Henry authored 4 years ago
  
  ef3acdb0
- Try to ignore err from seqtk version extraction · 43153b59
  Gervaise Henry authored 4 years ago
  
  43153b59
- Fix seqtk version extraction · 362879d3
  Gervaise Henry authored 4 years ago
  
  362879d3
- Try and fix seqtk version collection in unit test · 5a86b737
  Gervaise Henry authored 4 years ago
  
  5a86b737
- Remove unnecessary configs · 3bf03548
  Gervaise Henry authored 4 years ago
  
  3bf03548
- Fix downsample ci · fcab3193
  Gervaise Henry authored 4 years ago
  
  fcab3193
- Fix multiqc · 79adbc3a
  Gervaise Henry authored 4 years ago
  
  79adbc3a
- Fix tabing in multiqc config · 25a58702
  Gervaise Henry authored 4 years ago
  
  25a58702
- Add seqtk to references · 36caf093
  Gervaise Henry authored 4 years ago
  
  36caf093
- Fix extra tab in seqwho multiqc tsv · 2c70b0fc
  Gervaise Henry authored 4 years ago
  
  2c70b0fc
- Fix no download for fastqForce · aecc04e6
  Gervaise Henry authored 4 years ago
  
  aecc04e6
- Try to fix fastq count with fastq override · bbb54705
  Gervaise Henry authored 4 years ago
  
  bbb54705
- Fix endsForce test · 46772889
  Gervaise Henry authored 4 years ago
  
  46772889
- Fix ends force · bfe6bebc
  Gervaise Henry authored 4 years ago
  
  bfe6bebc
- Change getData fastqForce varible to param · 3026d63e
  Gervaise Henry authored 4 years ago
  
  3026d63e
- Set fastq count temporarily to zero if overridden · d633e19c
  Gervaise Henry authored 4 years ago
  
  d633e19c
- Fix seqwho tsv output for multiqc · 8f50b748
  Gervaise Henry authored 4 years ago
  
  8f50b748
- Add ends override · d3e19ff3
  Gervaise Henry authored 4 years ago
  
  d3e19ff3
- Don't donwload fastqs if overridden · 1e8d161e
  Gervaise Henry authored 4 years ago
  
  1e8d161e
- Update changelog · 30abfb69
  Gervaise Henry authored 4 years ago
  
  30abfb69
- Fix seqwho multiqc table · a9ee163f
  Gervaise Henry authored 4 years ago
  
  a9ee163f
- Add seqwho infer QC table to multiqc · d1271604
  Gervaise Henry authored 4 years ago
  
  d1271604
Mar 01, 2021
- Add missing speciesError to when · d9be943e
  Gervaise Henry authored 4 years ago
  
  d9be943e
- Put multiple when's into a single line · 84dd8e50
  Gervaise Henry authored 4 years ago
  
  84dd8e50
- Add handeling for low confidence seq type · 7a096fd5
  Gervaise Henry authored 4 years ago
  
  7a096fd5
Feb 28, 2021
- Disconnect confidence from species and seq type inference · b858a9d7
  Gervaise Henry authored 4 years ago
  
  b858a9d7
- Add quotes to seqwho error · 43f749d8
  Gervaise Henry authored 4 years ago
  
  43f749d8
- Add quotes to seqwho error · eec5b4c5
  Gervaise Henry authored 4 years ago
  
  eec5b4c5
- Merge dnanexus changes · edd49982
  Gervaise Henry authored 4 years ago
  
  edd49982
Feb 24, 2021
- Fix nf reference in ci · 94d3aaaa
  Gervaise Henry authored 4 years ago
  
  94d3aaaa
- Move nf and confs to match nextflow format · f8eeebc2
  Gervaise Henry authored 4 years ago
  
  f8eeebc2
Feb 23, 2021
- Add back mkdir -p in seqwho unit test · 6e2c01a8
  Gervaise Henry authored 4 years ago
  
  6e2c01a8
- Try removing ./ from seqwho -f in unit test · 91930b4a
  Gervaise Henry authored 4 years ago
  
  91930b4a
- Make dummy dir for plots · 6b2a74d6
  Gervaise Henry authored 4 years ago
  
  6b2a74d6
- Fix seqwho version collection in ci · 7b90b9dc
  Gervaise Henry authored 4 years ago
  
  7b90b9dc
- Use datahub as source for integration_se ci · 3ce1ddf7
  Gervaise Henry authored 4 years ago
  
  3ce1ddf7