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Commit 43f749d8 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Add quotes to seqwho error

parent eec5b4c5
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2 merge requests!76Develop,!71Seqwho
Pipeline #9302 failed with stages
in 22 minutes and 56 seconds
......@@ -812,7 +812,7 @@ process seqwho {
speciesErrorSeqwho=true
speciesErrorSeqwho_details=\$(echo "**Infered species and or sequencing type confidence is low:**\\n")
speciesErrorSeqwho_details=\$(echo \${speciesErrorSeqwho_details}"|fastq|Infered species confidence|Infered sequencing type confidence|\\n")
speciesErrorSeqwho_details=\$(echo \${speciesErrorSeqwho_details}""|:--|:--:|:--:|\\n)
speciesErrorSeqwho_details=\$(echo \${speciesErrorSeqwho_details}"|:--|:--:|:--:|\\n")
speciesErrorSeqwho_details=\$(echo \${speciesErrorSeqwho_details}"|Read 1|\${speciesConfidenceR1}|\${seqtypeConfidenceR1}|\\n")
if [ "${ends}" == "pe" ]
then
......
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