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Commit a9ee163f authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix seqwho multiqc table

parent d1271604
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2 merge requests!76Develop,!71Seqwho
Pipeline #9320 failed with stages
in 58 minutes and 57 seconds
......@@ -906,10 +906,10 @@ process seqwho {
# save seqwho multiqc report
echo -e "Read\tSeq Type\tSpecies\tConfidence\tSeq Type Confidence\tSeq Type Consensus\tSpecies Confidence" > seqwhoInfer.tsv
echo -e "Read 1\y\${seqtypeR1}\t\${speciesR1}\t\${confidenceR1}\${seqtypeConfidenceR1}\t\${consensus}\t\${speciesConfidenceR1}" >> seqwhoInfer.tsv
echo -e "Read 1\t\${seqtypeR1}\t\${speciesR1}\t\${confidenceR1}\${seqtypeConfidenceR1}\t\${consensus}\t\${speciesConfidenceR1}" >> seqwhoInfer.tsv
if [ "${ends}" == "pe" ]
then
echo -e "Read 2\y\${seqtypeR2}\t\${speciesR2}\t\${confidenceR2}\${seqtypeConfidenceR2}\t\${consensus}\t\${speciesConfidenceR2}" >> seqwhoInfer.tsv
echo -e "Read 2\t\${seqtypeR2}\t\${speciesR2}\t\${confidenceR2}\${seqtypeConfidenceR2}\t\${consensus}\t\${speciesConfidenceR2}" >> seqwhoInfer.tsv
fi
......
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