From a9ee163f42e824e69af82fcb8ddd611c58ae1ef8 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 2 Mar 2021 10:32:51 -0600
Subject: [PATCH] Fix seqwho multiqc table
---
rna-seq.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/rna-seq.nf b/rna-seq.nf
index 35ecf9a..923eccc 100644
--- a/rna-seq.nf
+++ b/rna-seq.nf
@@ -906,10 +906,10 @@ process seqwho {
# save seqwho multiqc report
echo -e "Read\tSeq Type\tSpecies\tConfidence\tSeq Type Confidence\tSeq Type Consensus\tSpecies Confidence" > seqwhoInfer.tsv
- echo -e "Read 1\y\${seqtypeR1}\t\${speciesR1}\t\${confidenceR1}\${seqtypeConfidenceR1}\t\${consensus}\t\${speciesConfidenceR1}" >> seqwhoInfer.tsv
+ echo -e "Read 1\t\${seqtypeR1}\t\${speciesR1}\t\${confidenceR1}\${seqtypeConfidenceR1}\t\${consensus}\t\${speciesConfidenceR1}" >> seqwhoInfer.tsv
if [ "${ends}" == "pe" ]
then
- echo -e "Read 2\y\${seqtypeR2}\t\${speciesR2}\t\${confidenceR2}\${seqtypeConfidenceR2}\t\${consensus}\t\${speciesConfidenceR2}" >> seqwhoInfer.tsv
+ echo -e "Read 2\t\${seqtypeR2}\t\${speciesR2}\t\${confidenceR2}\${seqtypeConfidenceR2}\t\${consensus}\t\${speciesConfidenceR2}" >> seqwhoInfer.tsv
fi
--
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