Skip to content
Snippets Groups Projects
Commit 6e2c01a8 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

Add back mkdir -p in seqwho unit test

parent 91930b4a
Branches
Tags
2 merge requests!76Develop,!71Seqwho
Pipeline #9286 failed with stages
in 3 hours, 55 minutes, and 40 seconds
......@@ -152,6 +152,7 @@ seqwho:
- schedules
script:
- wget -O SeqWho.ix https://cloud.biohpc.swmed.edu/index.php/s/eeNWqZz8jqN5zWY/download
- mkdir -p SeqWho_call_plots/test_data/fastq/small/
- singularity run 'docker://gudmaprbk/seqwho0.0.1:1.0.0' seqwho.py -h | grep -o Version.* > version_seqwho.txt
- singularity run 'docker://gudmaprbk/seqwho0.0.1:1.0.0' seqwho.py -f test_data/fastq/small/Q-Y5F6_1M.R1.fastq.gz -x SeqWho.ix
- pytest -m seqwho
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment