From 6e2c01a86ee06f4efdd2d2fe3ded767131beccf2 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Tue, 23 Feb 2021 22:12:11 -0600
Subject: [PATCH] Add back mkdir -p in seqwho unit test
---
.gitlab-ci.yml | 1 +
1 file changed, 1 insertion(+)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index d3713ba..046b87f 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -152,6 +152,7 @@ seqwho:
- schedules
script:
- wget -O SeqWho.ix https://cloud.biohpc.swmed.edu/index.php/s/eeNWqZz8jqN5zWY/download
+ - mkdir -p SeqWho_call_plots/test_data/fastq/small/
- singularity run 'docker://gudmaprbk/seqwho0.0.1:1.0.0' seqwho.py -h | grep -o Version.* > version_seqwho.txt
- singularity run 'docker://gudmaprbk/seqwho0.0.1:1.0.0' seqwho.py -f test_data/fastq/small/Q-Y5F6_1M.R1.fastq.gz -x SeqWho.ix
- pytest -m seqwho
--
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