Skip to content
Snippets Groups Projects
Commit f36d728b authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

Fix spike override ci pytest

parent 37a1345e
2 merge requests!68Develop,!67Resolve "Change Single Read to Single End for submitted endness"
......@@ -894,7 +894,7 @@ override_spike:
- nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5F0 --source staging --spikeForce t --upload true --dev false --ci true --track false -with-report ./spikeOverride_report.html
- find . -type f -name "multiqc_data.json" -exec cp {} ./spikeOverride_multiqc_data.json \;
- find ./**/report/ -type f -name "*multiqc.html" -exec cp {} ./spikeOverride_multiqc.html \;
- pytest -m completionMultiqc --filename spikeOverride_multiqc_data
- pytest -m completionMultiqc --filename spikeOverride_multiqc_data.json
artifacts:
name: "$CI_JOB_NAME"
when: always
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment