From f36d728b6e5dde6cb4a280e96d18ad3fea5cfb29 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Thu, 28 Jan 2021 21:25:17 -0600
Subject: [PATCH] Fix spike override ci pytest
---
.gitlab-ci.yml | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 70dff50..75a2ead 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -894,7 +894,7 @@ override_spike:
- nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5F0 --source staging --spikeForce t --upload true --dev false --ci true --track false -with-report ./spikeOverride_report.html
- find . -type f -name "multiqc_data.json" -exec cp {} ./spikeOverride_multiqc_data.json \;
- find ./**/report/ -type f -name "*multiqc.html" -exec cp {} ./spikeOverride_multiqc.html \;
- - pytest -m completionMultiqc --filename spikeOverride_multiqc_data
+ - pytest -m completionMultiqc --filename spikeOverride_multiqc_data.json
artifacts:
name: "$CI_JOB_NAME"
when: always
--
GitLab