diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 70dff50dd4805b1ec14f8a320890f150f2578152..75a2eadb00ac207b46f8167602737e85928c34f4 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -894,7 +894,7 @@ override_spike: - nextflow -q run ./workflow/rna-seq.nf --deriva ./test_data/auth/credential.json --bdbag ./test_data/auth/cookies.txt --repRID Q-Y5F0 --source staging --spikeForce t --upload true --dev false --ci true --track false -with-report ./spikeOverride_report.html - find . -type f -name "multiqc_data.json" -exec cp {} ./spikeOverride_multiqc_data.json \; - find ./**/report/ -type f -name "*multiqc.html" -exec cp {} ./spikeOverride_multiqc.html \; - - pytest -m completionMultiqc --filename spikeOverride_multiqc_data + - pytest -m completionMultiqc --filename spikeOverride_multiqc_data.json artifacts: name: "$CI_JOB_NAME" when: always